UNIX Command-Line Intro

Prerequisites

  •  Please, install Virtual Box and the Linux virtual machine we created for this course in your laptop. You will find all the information you need in this link.

Topics covered

Class I

  • Terminal file system navigation
  • Wildcards, shortcuts and special characters
  • File permissions
  • Compression UNIX commands
  • Networking UNIX commands

Class II

  • Basic NGS file formats
  • Text files manipulation commands
  • Command-line pipelines
  • Introduction to bash scripts

Estimated Time

  • Lecture and examples: 2:00 h

Material

Class I

Class II

 

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