GWAS using R

Topics covered

  • Population structure
  • Mixed model analysis
  • Plot GWAS outputs

Estimated Time

  • Lecture and examples: 1:30-2:00 h
  • Slides

Materials

Scripts including the main command (GWAS_Rcode) , R libraries (emma.r, mlmm.r, mlmm.cof.r) and a file to replace in /Home/Data/gwas of your VM (GWAS_snp_info.txt)

  1. GWAS_Rcode
  2. emma.r
  3. mlmm.r
  4. mlmm_cof.r
  5. GWAS_snp_info.txt
  6. GWAS_structureQ1.txt
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