Mapping NGS Data


  • Please, install Virtual Box and the Linux virtual machine we created for this course on your laptop. You will find all the information you need in this link.
  • Download the shell script and move it to your Virtual Machine Desktop.
  • Install Tablet software on the Virtual Machine for this session.

Topics covered

  • Overview of NGS sequence assembly
  • Reference-guided RNA-seq assembly with Tophat2
  • RNA-expression analysis with Cufflinks
  • Overview of other useful tools for NGS analysis

Estimated Time

  • Lecture and examples: 2:00 h



  1. No comments yet.
  1. No trackbacks yet.

Leave a Reply

Fill in your details below or click an icon to log in: Logo

You are commenting using your account. Log Out /  Change )

Google+ photo

You are commenting using your Google+ account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )


Connecting to %s

%d bloggers like this: