RNAseq Analysis

Topics covered

  • Background of RNA-seq
  • Application of RNA-seq (what RNA-seq can do?)
  • Available sequencing platforms and strategy and which one to choose
  • RNA-seq data analysis
    • Read processing and quality assessment
    • De novo assembly
    • Alignment to reference genome/transcriptome
    • Differentially expressed gene identification
    • Downstream analysis using Plant MetGenMAP

Estimated Time

  • Lecture and examples: 2:00 h


  1. No comments yet.
  1. No trackbacks yet.

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out /  Change )

Google+ photo

You are commenting using your Google+ account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )


Connecting to %s

%d bloggers like this: